IL_8BHF_174
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUU*GUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8BHF|1|A2|G|5031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_174 not in the Motif Atlas
- Homologous match to IL_5TBW_132
- Geometric discrepancy: 0.173
- The information below is about IL_5TBW_132
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BHF|1|A2|G|4982
8BHF|1|A2|U|4983
8BHF|1|A2|U|4984
*
8BHF|1|A2|G|5027
8BHF|1|A2|U|5028
8BHF|1|A2|C|5029
8BHF|1|A2|A|5030
8BHF|1|A2|G|5031
8BHF|1|A2|C|5032
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain J1
- TRASH domain-containing protein
- Chain Q1
- 60S ribosomal protein L31
- Chain k3
- Ribosomal protein L3
Coloring options: