IL_8BHF_194

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8BHF|1|A3|U|305, 8BHF|1|A3|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_194 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3823

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8BHF|1|A3|C|216
8BHF|1|A3|A|217
8BHF|1|A3|U|218
8BHF|1|A3|U|219
*
8BHF|1|A3|A|302
8BHF|1|A3|C|303
8BHF|1|A3|C|304
8BHF|1|A3|U|305
8BHF|1|A3|C|306
8BHF|1|A3|G|307
8BHF|1|A3|G|308
8BHF|1|A3|G|309

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain J3

40S ribosomal protein S8