IL_8BHF_199
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8BHF|1|A3|U|361, 8BHF|1|A3|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_199 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1041
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8BHF|1|A3|U|359
8BHF|1|A3|A|360
8BHF|1|A3|U|361
8BHF|1|A3|C|362
8BHF|1|A3|A|363
8BHF|1|A3|A|364
*
8BHF|1|A3|U|396
8BHF|1|A3|G|397
8BHF|1|A3|A|398
8BHF|1|A3|C|399
8BHF|1|A3|C|400
8BHF|1|A3|A|401
8BHF|1|A3|C|402
8BHF|1|A3|G|403
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain J3
- 40S ribosomal protein S8
- Chain M3
- 40S ribosomal protein S11
- Chain Y3
- Ribosomal protein S23
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