IL_8BHF_210

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_210 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2685

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BHF|1|A3|U|566
8BHF|1|A3|C|567
8BHF|1|A3|C|568
8BHF|1|A3|A|569
*
8BHF|1|A3|U|581
8BHF|1|A3|U|582
8BHF|1|A3|A|583
8BHF|1|A3|A|584

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain K3

Ribosomal protein S9 (Predicted)

Chain Z3

40S ribosomal protein S24