IL_8BHF_212

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8BHF|1|A3|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_212 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1791

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BHF|1|A3|G|611
8BHF|1|A3|U|612
8BHF|1|A3|G|613
8BHF|1|A3|C|614
8BHF|1|A3|C|615
8BHF|1|A3|A|616
8BHF|1|A3|G|617
*
8BHF|1|A3|C|624
8BHF|1|A3|G|625
8BHF|1|A3|G|626
8BHF|1|A3|U|627
8BHF|1|A3|A|628
8BHF|1|A3|A|629
8BHF|1|A3|U|630
8BHF|1|A3|U|631
8BHF|1|A3|C|632

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain E3

Ribosomal protein S3

Chain Y3

Ribosomal protein S23

Chain f3

Ubiquitin-like domain-containing protein