IL_8BHF_216
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_216 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0892
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8BHF|1|A3|C|676
8BHF|1|A3|G|677
8BHF|1|A3|U|678
8BHF|1|A3|A|679
8BHF|1|A3|G|680
*
8BHF|1|A3|U|1025
8BHF|1|A3|C|1026
8BHF|1|A3|A|1027
8BHF|1|A3|A|1028
8BHF|1|A3|G|1029
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain M3
- 40S ribosomal protein S11
- Chain O3
- ribosomal protein uS15
- Chain X3
- Ribosomal protein S15a
- Chain Y3
- Ribosomal protein S23
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