IL_8BHF_227
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8BHF|1|A3|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_227 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.1129
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8BHF|1|A3|C|931
8BHF|1|A3|G|932
8BHF|1|A3|G|933
8BHF|1|A3|G|934
8BHF|1|A3|G|935
*
8BHF|1|A3|C|1007
8BHF|1|A3|A|1008
8BHF|1|A3|A|1009
8BHF|1|A3|G|1010
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S3a
- Chain O3
- ribosomal protein uS15
- Chain P1
- 60S ribosomal protein L30
- Chain b3
- 40S ribosomal protein S26
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