IL_8BHF_248
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8BHF|1|A3|U|1494, 8BHF|1|A3|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_248 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1302
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A3|U|1333
8BHF|1|A3|G|1334
8BHF|1|A3|G|1335
*
8BHF|1|A3|U|1492
8BHF|1|A3|C|1493
8BHF|1|A3|U|1494
8BHF|1|A3|G|1495
8BHF|1|A3|U|1496
8BHF|1|A3|G|1497
8BHF|1|A3|A|1498
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain E3
- Ribosomal protein S3
- Chain L3
- Plectin/S10 N-terminal domain-containing protein
- Chain V3
- Ribosomal protein S20
- Chain e3
- 40S ribosomal protein S29
Coloring options: