IL_8BHF_295
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8BHF|1|A3|G|1285, 8BHF|1|A3|U|1314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_295 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2502
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BHF|1|A3|G|1281
8BHF|1|A3|A|1282
8BHF|1|A3|C|1283
8BHF|1|A3|A|1284
8BHF|1|A3|G|1285
8BHF|1|A3|G|1286
8BHF|1|A3|A|1287
8BHF|1|A3|U|1288
8BHF|1|A3|U|1289
8BHF|1|A3|G|1290
*
8BHF|1|A3|C|1309
8BHF|1|A3|U|1310
8BHF|1|A3|C|1311
8BHF|1|A3|G|1312
8BHF|1|A3|A|1313
8BHF|1|A3|U|1314
8BHF|1|A3|U|1315
8BHF|1|A3|C|1316
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain L3
- Plectin/S10 N-terminal domain-containing protein
- Chain N3
- 40S ribosomal protein S12
- Chain e3
- 40S ribosomal protein S29
- Chain g3
- Ubiquitin-40S ribosomal protein S27a
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