IL_8BQD_019

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8BQD|1|2|U|313, 8BQD|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1421

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8BQD|1|2|U|311
8BQD|1|2|A|312
8BQD|1|2|U|313
8BQD|1|2|C|314
8BQD|1|2|A|315
8BQD|1|2|A|316
*
8BQD|1|2|U|348
8BQD|1|2|U|349
8BQD|1|2|U|350
8BQD|1|2|C|351
8BQD|1|2|A|352
8BQD|1|2|A|353
8BQD|1|2|C|354
8BQD|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-B

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A