IL_8BQD_032

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8BQD|1|2|A|579, 8BQD|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_032 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1743

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BQD|1|2|G|562
8BQD|1|2|U|563
8BQD|1|2|G|564
8BQD|1|2|C|565
8BQD|1|2|C|566
8BQD|1|2|A|567
8BQD|1|2|G|568
*
8BQD|1|2|C|575
8BQD|1|2|G|576
8BQD|1|2|G|577
8BQD|1|2|U|578
8BQD|1|2|A|579
8BQD|1|2|A|580
8BQD|1|2|U|581
8BQD|1|2|U|582
8BQD|1|2|C|583

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

RPS3 isoform 1

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A