IL_8BQD_047
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_047 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1489
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8BQD|1|2|C|990
8BQD|1|2|G|991
8BQD|1|2|A|992
8BQD|1|2|A|993
8BQD|1|2|G|994
*
8BQD|1|2|C|1010
8BQD|1|2|G|1011
8BQD|1|2|U|1012
8BQD|1|2|A|1013
8BQD|1|2|G|1014
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 40S ribosomal protein S14-B
- Chain e
- RPS26B isoform 1
Coloring options: