IL_8BQD_054

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8BQD|1|2|C|1158, 8BQD|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_054 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1563

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

8BQD|1|2|A|1157
8BQD|1|2|C|1158
8BQD|1|2|C|1159
8BQD|1|2|A|1160
*
8BQD|1|2|U|1617
8BQD|1|2|C|1618
8BQD|1|2|C|1619
8BQD|1|2|C|1620
8BQD|1|2|U|1621

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Rps5p

Chain F

40S ribosomal protein S16-A

Chain L

RPS28A isoform 1