IL_8BQD_063
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8BQD|1|2|U|1432, 8BQD|1|2|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_063 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1754
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8BQD|1|2|U|1276
8BQD|1|2|G|1277
8BQD|1|2|G|1278
*
8BQD|1|2|U|1430
8BQD|1|2|C|1431
8BQD|1|2|U|1432
8BQD|1|2|G|1433
8BQD|1|2|U|1434
8BQD|1|2|G|1435
8BQD|1|2|A|1436
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- RPS3 isoform 1
- Chain C
- 40S ribosomal protein S10-A
- Chain J
- RPS20 isoform 1
- Chain M
- RPS29A isoform 1
Coloring options: