IL_8BQD_110

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8BQD|1|BQ|U|534, 8BQD|1|BQ|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_110 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1409

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BQD|1|BQ|G|531
8BQD|1|BQ|A|532
8BQD|1|BQ|A|533
8BQD|1|BQ|U|534
8BQD|1|BQ|G|535
8BQD|1|BQ|U|536
8BQD|1|BQ|A|537
8BQD|1|BQ|G|538
*
8BQD|1|BQ|U|553
8BQD|1|BQ|A|554
8BQD|1|BQ|U|555
8BQD|1|BQ|U|556
8BQD|1|BQ|A|557
8BQD|1|BQ|U|558
8BQD|1|BQ|A|559
8BQD|1|BQ|G|560
8BQD|1|BQ|C|561

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain BH

60S ribosomal protein L20-A