IL_8BQD_122
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|908, 8BQD|1|BQ|A|920, 8BQD|1|BQ|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_122 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1364
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BQD|1|BQ|G|907
8BQD|1|BQ|G|908
8BQD|1|BQ|G|909
*
8BQD|1|BQ|U|919
8BQD|1|BQ|A|920
8BQD|1|BQ|A|921
8BQD|1|BQ|U|922
8BQD|1|BQ|C|923
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain AX
- 60S ribosomal protein L17-A
Coloring options: