IL_8BQD_142

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8BQD|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_142 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2181

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8BQD|1|BQ|U|1218
8BQD|1|BQ|C|1219
8BQD|1|BQ|U|1220
8BQD|1|BQ|A|1221
8BQD|1|BQ|G|1222
8BQD|1|BQ|A|1223
8BQD|1|BQ|C|1224
8BQD|1|BQ|A|1225
8BQD|1|BQ|G|1226
*
8BQD|1|BQ|C|1283
8BQD|1|BQ|C|1284
8BQD|1|BQ|G|1285
8BQD|1|BQ|A|1286
8BQD|1|BQ|A|1287

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L40-A

Chain BH

60S ribosomal protein L20-A