IL_8BQD_149

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_149 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0877

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BQD|1|BQ|G|1444
8BQD|1|BQ|U|1445
8BQD|1|BQ|A|1446
8BQD|1|BQ|G|1447
8BQD|1|BQ|U|1448
8BQD|1|BQ|A|1449
8BQD|1|BQ|G|1450
*
8BQD|1|BQ|C|2354
8BQD|1|BQ|G|2355
8BQD|1|BQ|A|2356
8BQD|1|BQ|A|2357
8BQD|1|BQ|A|2358
8BQD|1|BQ|C|2359

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BE

RPL4A isoform 1

Chain BS

5.8S ribosomal RNA; 5.8S rRNA