IL_8BQD_213

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8BQD|1|BQ|U|3056, 8BQD|1|BQ|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_213 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1153

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8BQD|1|BQ|U|3054
8BQD|1|BQ|U|3055
8BQD|1|BQ|U|3056
8BQD|1|BQ|U|3057
8BQD|1|BQ|U|3058
8BQD|1|BQ|G|3059
*
8BQD|1|BQ|C|3084
8BQD|1|BQ|G|3085
8BQD|1|BQ|A|3086
8BQD|1|BQ|A|3087
8BQD|1|BQ|G|3088

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A