IL_8BQD_246
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8BQD|1|2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_246 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3001
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BQD|1|2|A|1224
8BQD|1|2|U|1225
8BQD|1|2|A|1226
8BQD|1|2|A|1227
8BQD|1|2|G|1228
8BQD|1|2|G|1229
8BQD|1|2|A|1230
8BQD|1|2|U|1231
8BQD|1|2|U|1232
8BQD|1|2|G|1233
*
8BQD|1|2|C|1252
8BQD|1|2|U|1253
8BQD|1|2|U|1254
8BQD|1|2|G|1255
8BQD|1|2|A|1256
8BQD|1|2|U|1257
8BQD|1|2|U|1258
8BQD|1|2|U|1259
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S10-A
- Chain D
- 40S ribosomal protein S12
- Chain M
- RPS29A isoform 1
- Chain N
- 40S ribosomal protein S31
Coloring options: