IL_8BQD_249

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_249 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.1084

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|U|1501
8BQD|1|BQ|C|1502
8BQD|1|BQ|A|1503
8BQD|1|BQ|A|1504
8BQD|1|BQ|C|1505
*
8BQD|1|BQ|G|1513
8BQD|1|BQ|G|1514
8BQD|1|BQ|A|1515

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A