IL_8BQX_019

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8BQX|1|2|U|313, 8BQX|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1421

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8BQX|1|2|U|311
8BQX|1|2|A|312
8BQX|1|2|U|313
8BQX|1|2|C|314
8BQX|1|2|A|315
8BQX|1|2|A|316
*
8BQX|1|2|U|348
8BQX|1|2|U|349
8BQX|1|2|U|350
8BQX|1|2|C|351
8BQX|1|2|A|352
8BQX|1|2|A|353
8BQX|1|2|C|354
8BQX|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A