IL_8BQX_033

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8BQX|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1403

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|G|616
8BQX|1|2|U|617
8BQX|1|2|U|618
8BQX|1|2|A|619
8BQX|1|2|A|620
8BQX|1|2|A|621
8BQX|1|2|A|622
*
8BQX|1|2|U|1104
8BQX|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-B