IL_8BQX_143

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8BQX|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_143 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2181

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8BQX|1|BQ|U|1218
8BQX|1|BQ|C|1219
8BQX|1|BQ|U|1220
8BQX|1|BQ|A|1221
8BQX|1|BQ|G|1222
8BQX|1|BQ|A|1223
8BQX|1|BQ|C|1224
8BQX|1|BQ|A|1225
8BQX|1|BQ|G|1226
*
8BQX|1|BQ|C|1283
8BQX|1|BQ|C|1284
8BQX|1|BQ|G|1285
8BQX|1|BQ|A|1286
8BQX|1|BQ|A|1287

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L40-A

Chain BH

60S ribosomal protein L20-A