IL_8BQX_154

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

8BQX|1|BQ|U|1820, 8BQX|1|BQ|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_154 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.3217

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8BQX|1|BQ|G|1623
8BQX|1|BQ|G|1624
8BQX|1|BQ|A|1625
*
8BQX|1|BQ|U|1818
8BQX|1|BQ|U|1819
8BQX|1|BQ|U|1820
8BQX|1|BQ|U|1821
8BQX|1|BQ|C|1822

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

RPL38 isoform 1

Chain BN

60S ribosomal protein L34-A