IL_8BQX_156

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_156 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1491

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BQX|1|BQ|U|1645
8BQX|1|BQ|G|1646
8BQX|1|BQ|A|1647
8BQX|1|BQ|A|1648
8BQX|1|BQ|U|1649
*
8BQX|1|BQ|A|1806
8BQX|1|BQ|G|1807
8BQX|1|BQ|G|1808
8BQX|1|BQ|A|1809
8BQX|1|BQ|A|1810

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A

Chain AW

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L34-A