IL_8BQX_163

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_163 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0854

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8BQX|1|BQ|A|1883
8BQX|1|BQ|A|1884
8BQX|1|BQ|U|1885
8BQX|1|BQ|A|1886
8BQX|1|BQ|A|1887
8BQX|1|BQ|U|1888
8BQX|1|BQ|G|1889
*
8BQX|1|BQ|C|2346
8BQX|1|BQ|U|2347
8BQX|1|BQ|A|2348
8BQX|1|BQ|U|2349

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A