IL_8BQX_207

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8BQX|1|BQ|A|3142, 8BQX|1|BQ|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_207 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0791

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BQX|1|BQ|C|3004
8BQX|1|BQ|A|3005
8BQX|1|BQ|A|3006
8BQX|1|BQ|U|3007
*
8BQX|1|BQ|A|3139
8BQX|1|BQ|G|3140
8BQX|1|BQ|A|3141
8BQX|1|BQ|A|3142
8BQX|1|BQ|C|3143
8BQX|1|BQ|G|3144

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3

Chain BS

5.8S ribosomal RNA; 5.8S rRNA