IL_8BQX_209

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_209 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1321

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BQX|1|BQ|C|3018
8BQX|1|BQ|U|3019
8BQX|1|BQ|U|3020
8BQX|1|BQ|A|3021
8BQX|1|BQ|G|3022
8BQX|1|BQ|U|3023
8BQX|1|BQ|A|3024
8BQX|1|BQ|C|3025
*
8BQX|1|BQ|G|3030
8BQX|1|BQ|G|3031
8BQX|1|BQ|A|3032
8BQX|1|BQ|A|3033
8BQX|1|BQ|C|3034
8BQX|1|BQ|A|3035
8BQX|1|BQ|G|3036

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AD

60S ribosomal protein L9-A

Chain BA

60S ribosomal protein L3