IL_8BQX_210
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 8BQX|1|BQ|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQX_210 not in the Motif Atlas
- Homologous match to IL_8C3A_126
- Geometric discrepancy: 0.1293
- The information below is about IL_8C3A_126
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- Major groove minor groove platform with tHH
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8BQX|1|BQ|U|3047
8BQX|1|BQ|A|3048
8BQX|1|BQ|A|3049
8BQX|1|BQ|U|3050
8BQX|1|BQ|U|3051
*
8BQX|1|BQ|A|3091
8BQX|1|BQ|C|3092
8BQX|1|BQ|C|3093
8BQX|1|BQ|A|3094
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AE
- 60S ribosomal protein L24-A
- Chain BA
- 60S ribosomal protein L3
Coloring options: