IL_8BR8_022
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GAAAG*CUGGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BR8|1|Lt|G|650, 8BR8|1|Lt|G|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_022 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.112
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BR8|1|Lt|G|522
8BR8|1|Lt|A|523
8BR8|1|Lt|A|524
8BR8|1|Lt|A|525
8BR8|1|Lt|G|526
*
8BR8|1|Lt|C|648
8BR8|1|Lt|U|649
8BR8|1|Lt|G|650
8BR8|1|Lt|G|651
8BR8|1|Lt|U|652
8BR8|1|Lt|A|653
8BR8|1|Lt|G|654
8BR8|1|Lt|C|655
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lk
- Ribosomal protein L37
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