IL_8BR8_039
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UGCGCCGC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_039 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2537
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|Lt|U|883
8BR8|1|Lt|G|884
8BR8|1|Lt|C|885
8BR8|1|Lt|G|886
8BR8|1|Lt|C|887
8BR8|1|Lt|C|888
8BR8|1|Lt|G|889
8BR8|1|Lt|C|890
*
8BR8|1|Lt|G|1025
8BR8|1|Lt|A|1026
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LH
- Ribosomal protein L7
- Chain LP
- Ribosomal protein L13a
- Chain LT
- 60S ribosomal protein L18a
- Chain Lg
- Ribosomal protein L35a
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