IL_8BR8_042
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 8BR8|1|Lt|G|1117
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_042 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0962
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8BR8|1|Lt|C|1063
8BR8|1|Lt|G|1064
8BR8|1|Lt|C|1065
*
8BR8|1|Lt|G|1116
8BR8|1|Lt|G|1117
8BR8|1|Lt|U|1118
8BR8|1|Lt|G|1119
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LD
- 5.8S rRNA
- Chain Lb
- Ribosomal protein L27a
- Chain Lf
- Ribosomal protein L32
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