IL_8BR8_046

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCAGUAG*CGAGCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_046 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1518

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|G|1132
8BR8|1|Lt|C|1133
8BR8|1|Lt|A|1134
8BR8|1|Lt|G|1135
8BR8|1|Lt|U|1136
8BR8|1|Lt|A|1137
8BR8|1|Lt|G|1138
*
8BR8|1|Lt|C|1842
8BR8|1|Lt|G|1843
8BR8|1|Lt|A|1844
8BR8|1|Lt|G|1845
8BR8|1|Lt|C|1846
8BR8|1|Lt|C|1847

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LD

5.8S rRNA

Chain LQ

Ribosomal protein L17