IL_8BR8_052

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCAC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_052 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1586

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8BR8|1|Lt|G|1326
8BR8|1|Lt|C|1327
8BR8|1|Lt|A|1328
8BR8|1|Lt|C|1329
*
8BR8|1|Lt|G|1429
8BR8|1|Lt|G|1430
8BR8|1|Lt|C|1431
8BR8|1|Lt|C|1432

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Lh

Ribosomal protein L34

Chain Lq

Ribosomal protein L37a