IL_8BR8_055
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGACG*CGGAGAGG
- Length
- 14 nucleotides
- Bulged bases
- 8BR8|1|Lt|A|1394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_055 not in the Motif Atlas
- Geometric match to IL_3U4M_004
- Geometric discrepancy: 0.2741
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8BR8|1|Lt|C|1378
8BR8|1|Lt|G|1379
8BR8|1|Lt|G|1380
8BR8|1|Lt|A|1381
8BR8|1|Lt|C|1382
8BR8|1|Lt|G|1383
*
8BR8|1|Lt|C|1391
8BR8|1|Lt|G|1392
8BR8|1|Lt|G|1393
8BR8|1|Lt|A|1394
8BR8|1|Lt|G|1395
8BR8|1|Lt|A|1396
8BR8|1|Lt|G|1397
8BR8|1|Lt|G|1398
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain La
- 60S ribosomal protein L27
- Chain Ld
- Ribosomal protein L30
- Chain Lq
- Ribosomal protein L37a
- Chain SP
- Ribosomal protein S13
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