IL_8BR8_096

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGCC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_096 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1807

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8BR8|1|Lt|C|2465
8BR8|1|Lt|C|2466
8BR8|1|Lt|G|2467
8BR8|1|Lt|C|2468
8BR8|1|Lt|C|2469
*
8BR8|1|Lt|G|2508
8BR8|1|Lt|C|2509
8BR8|1|Lt|G|2510

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LW

Ribosomal protein L23

Chain LX

Ribosomal protein L24