IL_8BR8_098

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCCG*CGCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_098 not in the Motif Atlas

Geometric match to IL_5J7L_348

Geometric discrepancy: 0.1913

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8BR8|1|Lt|C|2472
8BR8|1|Lt|C|2473
8BR8|1|Lt|C|2474
8BR8|1|Lt|C|2475
8BR8|1|Lt|G|2476
*
8BR8|1|Lt|C|2501
8BR8|1|Lt|G|2502
8BR8|1|Lt|C|2503
8BR8|1|Lt|C|2504
8BR8|1|Lt|G|2505

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LX

Ribosomal protein L24

Chain Le

Ribosomal protein L31B