IL_8BR8_112

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CACC*GG

Length

6 nucleotides

Bulged bases

8BR8|1|St|A|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_112 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.3072

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BR8|1|St|C|100
8BR8|1|St|A|101
8BR8|1|St|C|102
8BR8|1|St|C|103
*
8BR8|1|St|G|215
8BR8|1|St|G|216

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8

Chain SM

Ribosomal protein S11