IL_8BR8_118
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CAUCAC*GCCCGACG
- Length
- 14 nucleotides
- Bulged bases
- 8BR8|1|St|U|228, 8BR8|1|St|C|264
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_118 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1051
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8BR8|1|St|C|226
8BR8|1|St|A|227
8BR8|1|St|U|228
8BR8|1|St|C|229
8BR8|1|St|A|230
8BR8|1|St|C|231
*
8BR8|1|St|G|261
8BR8|1|St|C|262
8BR8|1|St|C|263
8BR8|1|St|C|264
8BR8|1|St|G|265
8BR8|1|St|A|266
8BR8|1|St|C|267
8BR8|1|St|G|268
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
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