IL_8BR8_127

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8BR8|1|St|A|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_127 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1109

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|G|442
8BR8|1|St|U|443
8BR8|1|St|G|444
8BR8|1|St|C|445
8BR8|1|St|C|446
8BR8|1|St|A|447
8BR8|1|St|G|448
*
8BR8|1|St|C|455
8BR8|1|St|G|456
8BR8|1|St|G|457
8BR8|1|St|U|458
8BR8|1|St|A|459
8BR8|1|St|A|460
8BR8|1|St|U|461
8BR8|1|St|U|462
8BR8|1|St|C|463

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain SO

Ribosomal protein S23

Chain Sj

40S ribosomal protein S30