IL_8BR8_128

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUUGAAA*UC

Length

9 nucleotides

Bulged bases

8BR8|1|St|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_128 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1266

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|G|496
8BR8|1|St|U|497
8BR8|1|St|U|498
8BR8|1|St|G|499
8BR8|1|St|A|500
8BR8|1|St|A|501
8BR8|1|St|A|502
*
8BR8|1|St|U|848
8BR8|1|St|C|849

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SO

Ribosomal protein S23

Chain Sd

40S ribosomal protein S26