IL_8BR8_129
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_129 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0899
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8BR8|1|St|C|507
8BR8|1|St|G|508
8BR8|1|St|U|509
8BR8|1|St|A|510
8BR8|1|St|G|511
*
8BR8|1|St|U|722
8BR8|1|St|C|723
8BR8|1|St|A|724
8BR8|1|St|A|725
8BR8|1|St|G|726
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SJ
- Ribosomal protein S15A
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
- Chain SP
- Ribosomal protein S13
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