IL_8BR8_139
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8BR8|1|St|G|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_139 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.1385
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8BR8|1|St|C|628
8BR8|1|St|G|629
8BR8|1|St|G|630
8BR8|1|St|G|631
8BR8|1|St|G|632
*
8BR8|1|St|C|704
8BR8|1|St|A|705
8BR8|1|St|A|706
8BR8|1|St|G|707
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain Ld
- Ribosomal protein L30
- Chain SD
- 40S ribosomal protein S3a
- Chain SP
- Ribosomal protein S13
- Chain Sd
- 40S ribosomal protein S26
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