IL_8BR8_144
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- AGAAG*CGUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_144 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1769
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8BR8|1|St|A|744
8BR8|1|St|G|745
8BR8|1|St|A|746
8BR8|1|St|A|747
8BR8|1|St|G|748
*
8BR8|1|St|C|764
8BR8|1|St|G|765
8BR8|1|St|U|766
8BR8|1|St|A|767
8BR8|1|St|U|768
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain Lo
- 60S ribosomal protein L41
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SQ
- Ribosomal protein S14
- Chain Sd
- 40S ribosomal protein S26
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