IL_8BR8_173

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCU*AGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_173 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3834

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8BR8|1|St|C|1332
8BR8|1|St|G|1333
8BR8|1|St|C|1334
8BR8|1|St|U|1335
*
8BR8|1|St|A|1408
8BR8|1|St|G|1409
8BR8|1|St|A|1410
8BR8|1|St|A|1411
8BR8|1|St|G|1412

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lo

60S ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein S23