IL_8BR8_190
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8BR8|1|St|C|1016, 8BR8|1|St|U|1138, 8BR8|1|St|G|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_190 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1816
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|St|U|1014
8BR8|1|St|G|1015
8BR8|1|St|C|1016
8BR8|1|St|A|1017
8BR8|1|St|U|1018
8BR8|1|St|G|1019
8BR8|1|St|G|1020
*
8BR8|1|St|U|1136
8BR8|1|St|C|1137
8BR8|1|St|U|1138
8BR8|1|St|G|1139
8BR8|1|St|U|1140
8BR8|1|St|G|1141
8BR8|1|St|A|1142
8BR8|1|St|U|1143
8BR8|1|St|G|1144
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SC
- Ribosomal protein S3
- Chain SL
- Ribosomal protein S10B
- Chain SX
- Ribosomal protein S20
- Chain Sh
- Ribosomal protein S29A
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