IL_8C00_032

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8C00|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_032 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1673

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8C00|1|2|G|616
8C00|1|2|U|617
8C00|1|2|U|618
8C00|1|2|A|619
8C00|1|2|A|620
8C00|1|2|A|621
8C00|1|2|A|622
*
8C00|1|2|U|1104
8C00|1|2|C|1105

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1