3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGUAG*UCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C00_034 not in the Motif Atlas
Homologous match to IL_4V88_418
Geometric discrepancy: 0.1119
The information below is about IL_4V88_418
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

8C00|1|2|C|627
8C00|1|2|G|628
8C00|1|2|U|629
8C00|1|2|A|630
8C00|1|2|G|631
*
8C00|1|2|U|968
8C00|1|2|C|969
8C00|1|2|A|970
8C00|1|2|A|971
8C00|1|2|G|972

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain X
40S ribosomal protein S11-A
Chain Y
40S ribosomal protein S13
Chain b
40S ribosomal protein S22-A
Chain c
40S ribosomal protein S23-A

Coloring options:


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