IL_8C00_043

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8C00|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_043 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1226

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8C00|1|2|C|874
8C00|1|2|G|875
8C00|1|2|G|876
8C00|1|2|G|877
8C00|1|2|G|878
*
8C00|1|2|C|950
8C00|1|2|A|951
8C00|1|2|A|952
8C00|1|2|G|953

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Y

40S ribosomal protein S13